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50 Healthy Muffin Recipes

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Get ready to indulge in guilt-free goodness with our collection of 50 Healthy Muffin Recipes! From banana nut to chocolate chip, these muffins are packed with flavor and nutrition.

Low Carb Sugar Free Keto Blueberry Muffins with Almond Flour

Low Carb Sugar Free Keto Blueberry Muffins with Almond Flour

These Low Carb Sugar Free Keto Blueberry Muffins with Almond Flour are SO tender and moist! Hard to believe they are healthy and gluten free!

Apple Banana Muffins

These Apple Banana Muffins are the perfect mash up of two fruits! Full of natural sweetness, a hint of spice, and easily made gluten free!

Nutrition

Calories: 193kcal | Carbohydrates: 26g | Protein: 2.4g | Fat: 9.6g | Saturated Fat: 0.8g | Polyunsaturated Fat: 2.8g | Monounsaturated Fat: 5.5g | Cholesterol: 15.5mg | Sodium: 208mg | Potassium: 152mg | Fiber: 1.7g | Sugar: 11.4g | Vitamin A: 1IU | Vitamin C: 6mg | Iron: 4mg

Egg Muffins with Savory Oatmeal Vegetable Crust

These quick and easy egg muffins have a vegetable and savory oatmeal crust! They’re a healthy and gluten free portable snack or breakfast for busy mornings, with only 80 calories and 2 Weight Watchers Smart Points!

Healthy Chocolate Chip Banana Muffins

These Whole Wheat Banana Muffins are loaded with chocolate chips and are so moist and fluffy you will never believe they are so healthy!

Nutrition

Calories: 240kcal | Carbohydrates: 29g | Protein: 3.5g | Fat: 12.6g | Saturated Fat: 9.9g | Polyunsaturated Fat: 0.3g | Monounsaturated Fat: 0.7g | Cholesterol: 16.9mg | Sodium: 227mg | Potassium: 123mg | Fiber: 3.1g | Sugar: 13.7g | Vitamin A: 1IU | Vitamin C: 5mg | Calcium: 2.5mg | Iron: 7.5mg
High Protein Blueberry Quinoa Muffins - Naturally sweetened, gluten free, dairy free and packed with plant based protein and fiber! These muffins are quick and easy to make and great for kids lunchboxes or snacks! Adults love them too! | #Foodfaithfitness | #Glutenfree #Dairyfree #Proteinpowder #Healthy #Quinoa

Blueberry High Protein Muffins

These blueberry high protein muffins are made gluten free with quinoa. They’re naturally sweetened and so quick and easy to make! Perfect for a healthy on the go snack!

Nutrition

Calories: 176kcal | Carbohydrates: 22.8g | Protein: 6.4g | Fat: 7.7g | Saturated Fat: 5g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 0.07g | Cholesterol: 53mg | Sodium: 71mg | Potassium: 89mg | Fiber: 2.1g | Sugar: 14.8g | Vitamin A: 95IU | Vitamin C: 1.9mg | Calcium: 11mg | Iron: 1.3mg

Pumpkin Oatmeal Muffins

These Pumpkin Oatmeal Muffins are perfect for a cool fall morning breakfast! Healthy, easily on the go, and dairy/gluten free!

Nutrition

Calories: 206kcal | Carbohydrates: 30g | Protein: 4g | Fat: 8g | Saturated Fat: 1g | Polyunsaturated Fat: 2g | Monounsaturated Fat: 5g | Trans Fat: 1g | Cholesterol: 31mg | Sodium: 330mg | Potassium: 130mg | Fiber: 3g | Sugar: 14g | Vitamin A: 3224IU | Vitamin C: 1mg | Calcium: 43mg | Iron: 1mg
Healthy Zucchini Bread Muffins - These dairy free Zucchini Muffins are fluffy and gluten, dairy, oil and sugar free! Sweetened with dates, studded with chocolate chips and only 170 calories! Great for kids and adults! | #Foodfaithfitness |

Healthy Gluten Free Zucchini Muffins

These Healthy Gluten Free Zucchini Muffins with Applesauce are fluffy and sugar free! Sweetened with dates, studded with chocolate chips and so tasty!

Nutrition

Calories: 168kcal | Carbohydrates: 30.9g | Protein: 4.1g | Fat: 4g | Saturated Fat: 1.7g | Cholesterol: 26.6mg | Sodium: 100mg | Potassium: 185.4mg | Fiber: 3.8g | Sugar: 18.9g | Vitamin A: 255IU | Vitamin C: 1.2mg | Calcium: 46mg | Iron: 1.6mg
Almond, Cherry and Apricot Quinoa Muffins - These spicy-sweet, healthy quinoa muffins are packed with roasted cherries and apricots! They're an easy, portable breakfast or snack that's gluten free and kid friendly! | Foodfaithfitness.com | @FoodFaithFit

Healthy Gluten Free Quinoa Muffins

These spicy-sweet Healthy Gluten Free Quinoa Muffins are packed with roasted cherries and apricots! They’re an easy breakfast or snack!

Nutrition

Calories: 112kcal | Fat: 5.6g | Saturated Fat: 0.7g | Polyunsaturated Fat: 1.3g | Monounsaturated Fat: 2.7g | Cholesterol: 33.8mg | Sodium: 48mg | Potassium: 138.8mg | Fiber: 1.6g | Sugar: 8g
Mediterranean Keto Low Carb Egg Muffins - These easy, healthy egg muffins have a little Mediterranean flair and are packed with protein! A portable, healthy and gluten free breakfast or snack that is keto friendly and low carb! | #Foodfaithfitness | #Glutenfree #Keto #Lowcarb #Breakfast #Healthy

Mediterranean Keto Low Carb Egg Muffins with ham

These EASY Keto Low Carb Egg Muffins with ham have Mediterranean flair and are packed with protein! A portable, healthy and gluten free breakfast or snack!

Nutrition

Calories: 109kcal | Carbohydrates: 1.8g | Protein: 9.3g | Fat: 6.7g | Saturated Fat: 2.4g | Polyunsaturated Fat: 0.9g | Monounsaturated Fat: 1.7g | Cholesterol: 169mg | Sodium: 423mg | Potassium: 60mg | Fiber: 1.8g | Sugar: 1.2g | Vitamin A: 500IU | Vitamin C: 10.7mg | Calcium: 50mg | Iron: 0.9mg
6 Ingredient Taco Egg Muffins - These 6-ingredient, kid-friendly taco breakfast egg muffins have all the Mexican taste without the carbs! They're an easy, healthy, gluten free and protein packed portable breakfast with only 105 calories! | Foodfaithfitness.com| @FoodFaithFit

Taco Breakfast Egg Muffins

These 6-ingredient, kid-friendly taco breakfast egg muffins have all the Mexican taste without the carbs! They’re an easy, healthy, gluten free and protein packed portable breakfast for busy mornings with only 105 calories!

Strawberry Rhubarb Oatmeal Muffins

These healthy, gluten free Strawberry Rhubarb Oatmeal muffins are sweetened with dates and use no added sugar, butter or oil! They're only 125 calories too!

Nutrition

Calories: 123kcal | Carbohydrates: 25.9g | Protein: 3.8g | Fat: 1.4g | Saturated Fat: 0.2g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 0.5g | Cholesterol: 0.5mg | Sodium: 105.6mg | Potassium: 171.7mg | Fiber: 3.3g | Sugar: 13.7g | Vitamin A: 45IU | Vitamin C: 10.6mg | Calcium: 54mg | Iron: 1mg
Gluten Free Paleo Pumpkin Muffins with Almond Flour

Gluten Free Paleo Pumpkin Muffins with Almond Flour

These easy, healthy Gluten Free Paleo Pumpkin Muffins with Almond Flour are SO spicy-sweet and FLUFFY! A yummy, fall breakfast or snack for kids and adults!
Sugar Free Gluten Free Oatmeal Carrot Muffins - These easy carrot muffins are naturally sweetened with dates and have a surprise, spicy-sweet kick! SO light and fluffy! Gluten free, healthy and tasty! | #Foodfaithfitness |

Sugar Free Gluten Free Oatmeal Carrot Muffins with Garam Masala

Sugar Free Gluten Free Oatmeal Carrot Muffins are a way to make your day start brighter and healthier. Filing and delightful, they’ll be your new favorite muffin.

Nutrition

Serving: 1g | Calories: 172kcal | Carbohydrates: 35g | Protein: 3g | Fat: 2g | Sodium: 179mg | Fiber: 4g | Sugar: 19g
one Zucchini Blueberry Muffins cut in half

Zucchini Blueberry Muffins

These Zucchini Blueberry Muffins are a perfect mash-up recipe! Deliciously tender, moist, and bursting with fruitiness & flakes of zucchini!

Nutrition

Calories: 217kcal | Carbohydrates: 28.9g | Protein: 2.7g | Fat: 10.2g | Saturated Fat: 1.6g | Polyunsaturated Fat: 1.5g | Monounsaturated Fat: 7g | Cholesterol: 30mg | Sodium: 233mg | Potassium: 86mg | Fiber: 1.2g | Sugar: 14.8g | Vitamin A: 4IU | Vitamin C: 4mg | Calcium: 9mg | Iron: 5mg

Low Carb Keto Zucchini Muffins

These Low Carb Keto Zucchini Muffins use almond flour and tahini to make them so moist and fluffy! Healthy, gluten free and dairy free too!

Nutrition

Calories: 217kcal | Carbohydrates: 8.6g | Protein: 8.2g | Fat: 18.5g | Saturated Fat: 1.9g | Polyunsaturated Fat: 2.5g | Monounsaturated Fat: 2.4g | Cholesterol: 31mg | Sodium: 221.1mg | Potassium: 132.2mg | Fiber: 4g | Sugar: 1.5g | Vitamin A: 400IU | Vitamin C: 1.9mg | Calcium: 112mg | Iron: 2.1mg

Easy Gluten Free Healthy Carrot Cake Muffins

These Easy Gluten Free Healthy Carrot Cake Muffins are quick, simple and made from pantry-essential ingredients! Perfect for a quick breakfast or snack!

Nutrition

Calories: 150kcal | Carbohydrates: 25.7g | Protein: 3.6g | Fat: 4.6g | Saturated Fat: 0.6g | Polyunsaturated Fat: 1.4g | Monounsaturated Fat: 2.3g | Cholesterol: 27mg | Sodium: 102.2mg | Potassium: 76mg | Fiber: 1.9g | Sugar: 17.4g | Vitamin A: 1095IU | Vitamin C: 2.1mg | Calcium: 23mg | Iron: 0.7mg

Low Carb Keto Pumpkin Muffins

These Keto Pumpkin Muffins are made with almond flour and are so moist and fluffy you won't beleive they're low carb and healthy!

Nutrition

Calories: 251kcal | Carbohydrates: 21g | Protein: 8g | Fat: 22g | Saturated Fat: 7.3g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 0.8g | Cholesterol: 46mg | Sodium: 450mg | Potassium: 17.5mg | Fiber: 4.6g | Sugar: 1.5g | Vitamin A: 34.5IU | Calcium: 14mg | Iron: 8mg
Flourless Oatmeal Applesauce Almond Butter Muffins

Flourless Oatmeal Applesauce Almond Butter Muffins

These Flourless Oatmeal Applesauce Almond Butter Muffins are made with oats, almond butter and topped with coconut. Easy and gluten and dairy free!

Applesauce Muffins

These Applesauce Muffins are so perfectly moist and tender! A delicious breakfast snack!

Nutrition

Calories: 171kcal | Carbohydrates: 27.9g | Protein: 3.1g | Fat: 5.5g | Saturated Fat: 0.9g | Polyunsaturated Fat: 0.8g | Monounsaturated Fat: 3.6g | Cholesterol: 31mg | Sodium: 299mg | Potassium: 61mg | Fiber: 1g | Sugar: 11.2g | Calcium: 2mg | Iron: 5mg

Healthy Gluten Free Chocolate Chip Muffins

These Healthy Gluten Free Chocolate Chip Muffins are SO fluffy and great for kids or adults! Learn the secrets to making muffins with big, domed tops!

Nutrition

Calories: 250kcal | Carbohydrates: 36g | Protein: 4.2g | Fat: 10.1g | Saturated Fat: 6.9g | Polyunsaturated Fat: 0.8g | Monounsaturated Fat: 1.2g | Cholesterol: 38mg | Sodium: 130mg | Potassium: 13.8mg | Fiber: 2.1g | Sugar: 22g | Vitamin A: 1.2IU | Calcium: 0.4mg | Iron: 6.1mg

Healthy Gluten Free Sweet Potato Muffins

These Healthy Gluten Free Sweet Potato Muffins are packed with spicy-sweetness and lots of chocolate chip! Paleo friendly, made in one bowl and SO fluffy!

Nutrition

Calories: 186kcal | Carbohydrates: 21.7g | Protein: 4.4g | Fat: 10.4g | Saturated Fat: 3.1g | Polyunsaturated Fat: 3.1g | Monounsaturated Fat: 2.8g | Cholesterol: 31mg | Sodium: 135mg | Potassium: 63mg | Fiber: 3.3g | Sugar: 14.1g | Vitamin A: 3900IU | Vitamin C: 5.4mg | Calcium: 75mg | Iron: 2.3mg

Vegan Vanilla Chai Protein Muffins

These vegan protein muffins are loaded with spicy-sweet chai and vanilla flavor! They’re an easy, gluten free and vegan friendly portable breakfast or healthy snack!
Gluten Free Lemon Blueberry Muffin Breakfast Casserole - This muffin gluten free breakfast casserole is a creative way to use your muffins, and is only 5 ingredients and 200 calories! Perfect for spring brunch or Mother's Day! | Foodfaithfitness.com | @FoodFaithFit

Lemon Muffin Gluten Free Breakfast Casserole

Lemon Muffin Gluten Free Breakfast Casserole

Nutrition

Calories: 198kcal | Carbohydrates: 24.5g | Protein: 5g | Fat: 9g | Saturated Fat: 2.5g | Polyunsaturated Fat: 0.5g | Monounsaturated Fat: 1.2g | Cholesterol: 128mg | Sodium: 248mg | Fiber: 0.75g | Sugar: 12.9g | Vitamin A: 337.5IU | Vitamin C: 3.3mg | Calcium: 98.5mg | Iron: 0.9mg
Paleo Ham, Egg and Cauliflower Egg Muffins - A healthy. protein packed portable breakfast that is ready in under 30 mins! | Foodfaithfitness.com | @FoodFaithFit

Egg Muffins with Ham, Kale and Cauliflower Rice {Paleo, High Protein + Super Simple}

These paleo-friendly egg muffins are made with only 4 ingredients and are so quick, easy and healthy! Perfect for a protein-packed breakfast on the go!

Nutrition

Calories: 76kcal | Carbohydrates: 2.8g | Protein: 6.9g | Fat: 4.3g | Saturated Fat: 1.4g | Polyunsaturated Fat: 0.8g | Monounsaturated Fat: 1.7g | Cholesterol: 102.6mg | Sodium: 267.7mg | Potassium: 190mg | Fiber: 0.9g | Sugar: 0.7g | Vitamin A: 3100IU | Vitamin C: 22.3mg | Calcium: 30mg | Iron: 0.8mg
Paleo Chocolate Muffins with Tahini

Paleo Chocolate Muffins with Tahini

These gluten free Paleo Chocolate Muffins are sweetened with maple syrup and have a hint of tahini! They’re a healthy, easy breakfast for busy mornings!
Whole30 Spinach and Artichoke Egg Muffins - These easy, 6 ingredient paleo spinach breakfast egg muffins are low carb, gluten free, and under 100 calories! Perfect for busy mornings! | Foodfaithfitness.com | @FoodFaithFit

Spinach Breakfast Egg Muffins with Artichokes

These easy, 6 ingredient paleo spinach breakfast egg muffins are low carb, gluten free,  whole30 compliant and under 100 calories! Perfect for busy mornings!

Nutrition

Calories: 78kcal | Carbohydrates: 1.9g | Protein: 8.7g | Fat: 3.8g | Saturated Fat: 1g | Polyunsaturated Fat: 0.6g | Monounsaturated Fat: 1.7g | Cholesterol: 102.2mg | Sodium: 165.3mg | Potassium: 62.4mg | Fiber: 0.6g | Sugar: 0.4g | Vitamin A: 670IU | Vitamin C: 2.7mg | Calcium: 25mg | Iron: 1.3mg
Mini Peanut Butter Muffins with Strawberries - These gluten and grain free muffins are made in the food processor and are ready in 15 minutes! Perfect for a healthy, portable, breakfast or snack! | Foodfaithfitness.com | @FoodFaithFit

Peanut Butter and Jelly Quinoa Egg Muffins

This egg muffin recipe tastes like a peanut butter and jelly sandwich and is quick, easy, healthy and portable! They’re great for kids and adults!

Nutrition

Calories: 157kcal | Carbohydrates: 17.6g | Protein: 6.8g | Fat: 7.6g | Saturated Fat: 1.4g | Polyunsaturated Fat: 2.1g | Monounsaturated Fat: 3.4g | Cholesterol: 23mg | Sodium: 90mg | Potassium: 175mg | Fiber: 2.1g | Sugar: 11g | Vitamin A: 90IU | Vitamin C: 14.9mg | Calcium: 53mg | Iron: 0.5mg

Gluten Free Pumpkin Oatmeal Muffins

Quick and easy, gluten free pumpkin oatmeal muffins that are healthy, delicious, and full of cranberries! Perfect for breakfast or snack!!

Nutrition

Calories: 144kcal | Carbohydrates: 30g | Protein: 4g | Fat: 1.8g | Saturated Fat: 0.4g | Polyunsaturated Fat: 0.6g | Monounsaturated Fat: 0.7g | Cholesterol: 23mg | Sodium: 86mg | Potassium: 74mg | Fiber: 2.6g | Sugar: 16.7g | Vitamin A: 72IU | Vitamin C: 1.6mg | Calcium: 0.9mg | Iron: 6.6mg

Vegan Pumpkin Muffins

These vegan pumpkin muffins are perfectly spicy-sweet and made in one bowl! You won't believe they are dairy free, egg free and better for ya!

Nutrition

Calories: 187kcal | Carbohydrates: 34g | Protein: 2.7g | Fat: 6.1g | Saturated Fat: 0.4g | Polyunsaturated Fat: 1.7g | Monounsaturated Fat: 3.5g | Sodium: 350mg | Potassium: 52mg | Fiber: 2.4g | Sugar: 15.5g | Calcium: 4mg | Iron: 5mg
Chocolate muffin

Healthy Chocolate Chip Muffins With Cream Cheese Filling

These Healthy Chocolate Chip Muffins are whole wheat, filled with cream cheese and are SO moist, chocolatey and only 150 calories! 
Upside Down Citrus Gluten Free Muffins - These vegan muffins are made with coconut sugar, grapefruit and oranges! They're a healthy breakfast or snack for busy mornings that are only 200 calories! | Foodfaithfitness.com | @FoodFaithFit

Vegan Citrus Upside Down Gluten Free Muffins

These easy upside down vegan gluten free muffins are made with coconut sugar, Gimbi Pink Grapefruit Bai Bubbles, and oranges! They’re a healthy breakfast or snack for busy mornings!
Dairy Free Vegan Carrot Muffins

Dairy Free Vegan Carrot Muffins

These Dairy Free Vegan Carrot Muffins are super fluffy, moist and tender! You will never believe they are healthy, gluten free and egg free!
Buffalo Chicken Egg Muffin Recipe

Buffalo Chicken Egg Muffin Recipe

This egg muffin recipe has all the buffalo chicken taste you love in a super easy and healthy, portable breakfast! Perfect for busy, on-the-go mornings!
The BEST Healthy Gluten Free Gingerbread Muffins  - This truly is the best healthy gingerbread muffin recipe! Dairy and egg free, vegan friendly and only 5 ingredients and perfect for Christmas morning! | Foodfaithfitness.com | @FoodFaithFit

The Best Healthy Gluten Free Gingerbread Muffins

These truly are the best healthy gluten free gingerbread muffins! And they’re easy, dairy and egg free, vegan friendly and only 5 ingredients too!

Nutrition

Calories: 182kcal | Carbohydrates: 32.6g | Protein: 4.1g | Fat: 4.5g | Saturated Fat: 0.6g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 3.3g | Sodium: 261mg | Potassium: 133mg | Fiber: 1.6g | Sugar: 17.6g | Iron: 0.8mg

Gluten Free Paleo Lemon Poppy Seed Muffins

These Gluten Free Paleo Lemon Poppy Seed Muffins are made with almond flour and are light, fluffy and perfectly sweet and tangy! A must make for breakfast!

Nutrition

Calories: 319kcal | Carbohydrates: 31.4g | Protein: 8.8g | Fat: 20.4g | Saturated Fat: 4.1g | Polyunsaturated Fat: 0.6g | Monounsaturated Fat: 0.6g | Cholesterol: 41.3mg | Sodium: 297.3mg | Potassium: 49mg | Fiber: 4.9g | Sugar: 22.3g | Vitamin A: 1.4IU | Vitamin C: 10.6mg | Calcium: 13.2mg | Iron: 9mg
Healthy Gluten Free Chocolate Pumpkin Muffins - SO moist and chewy! Made with whole grains, dairy free, low fat, only 140 calories!  Perfect for breakfast or snack and kid friendly too! | Foodfaithfitness.com | @FoodFaitFit

Healthy Gluten Free Chocolate Pumpkin Muffins (145 Calories)

 These Chocolate Healthy Gluten Free Pumpkin Muffins are so moist and chewy! Dairy free, low fat, only 145 calories and perfect for breakfast or snack!

Nutrition

Calories: 145kcal | Carbohydrates: 27g | Protein: 4.4g | Fat: 3.5g | Saturated Fat: 1.3g | Polyunsaturated Fat: 0.1g | Monounsaturated Fat: 0.2g | Sodium: 216mg | Potassium: 54.4mg | Fiber: 4.4g | Sugar: 12.8g | Vitamin A: 1540IU | Vitamin C: 0.2mg | Calcium: 53mg | Iron: 1.6mg
Paleo Egg Muffins with Maple Almond Sweet Potato Noodles and Bacon - A sweet and savory, portable breakfast or snack that is gluten free, protein packed, low carb and perfect for busy mornings! | Foodfaithfitness.com | @FoodFaithFit

Egg Muffins with Maple Sweet Potato Noodles, Bacon and Almond Butter

These sweet and savory egg muffins have maple syrup, sweet potato noodles and bacon! They’re a paleo, gluten free and portable breakfast for busy mornings!
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About Taylor Kiser

Taylor Kiser is a Certified Personal Trainer and Nutrition Coach and a lover of health and fitness. A follower of Christ. Recipe developer. Photographer. Obsessed with cookie dough, pink & leopard print.

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